Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1244501 chr10:7878310 A/G 0.000148 502 31.47 33.07 19.1 KM Plot
THCA rs1244502 chr10:7877784 G/A 0.000148 502 31.47 33.07 19.1 KM Plot
THCA rs1244503 chr10:7877499 G/C 0.000148 502 31.47 33.07 19.1 KM Plot
THCA rs12445681 chr16:79267848 A/T 6.76E-13 478 31.7 31 19.35 KM Plot
THCA rs12446178 chr16:79273611 A/G 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs12446263 chr16:79267811 T/C 6.76E-13 478 31.7 31 19.35 KM Plot
THCA rs12446298 chr16:79274104 A/G 4.63E-12 500 31.62 31.33 19.35 KM Plot
THCA rs12446340 chr16:79274239 A/C 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs12446840 chr16:79273682 T/C 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs12447735 chr16:79275255 A/G 3.98E-12 503 31.62 31 19.35 KM Plot
THCA rs12448739 chr16:79273313 C/T 0 503 31.47 32.27 5.8 KM Plot
THCA rs12448935 chr16:79274174 G/C 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs12459523 chr19:9809844 C/A 4.32E-6 502 31.42 33.62 32.9 KM Plot
THCA rs12460763 chr19:2138507 A/G 0.000135 490 31.9 31.68 31.45 KM Plot
THCA rs12461338 chr19:9840908 G/A 4.46E-6 501 31.45 32.9 32.9 KM Plot